Enhance clarity and structure in introduction, background, reproducibility, system design, and implementation chapters; add new references and include TikZ for diagrams

- Refine introduction and background chapters for clarity and coherence.
- Enhance reproducibility chapter by connecting challenges to infrastructure requirements.
- Add new references to support the thesis arguments.
- Update .gitignore to include IDE files.
- Modify hyperref package usage to hide colored boxes in the document.

.gitignore

@@ -22,3 +22,6 @@ context
 
 # OS files
 .DS_Store
+
+# IDE files
+.vscode/

thesis/chapters/01_introduction.tex

@@ -1,24 +1,32 @@
 \chapter{Introduction}
 \label{ch:intro}
 
+Human-Robot Interaction (HRI) is an essential field of study for understanding how robots should communicate, collaborate, and coexist with people. As researchers work to develop social robots capable of natural interaction, they face a fundamental challenge: how to prototype and evaluate interaction designs before the underlying autonomous systems are fully developed. This chapter introduces the technical and methodological barriers that currently limit HRI research, describes a generalized approach to address these challenges, and establishes the research objectives and thesis statement for this work.
+
 \section{Motivation}
 
-To build the social robots of tomorrow, researchers must find ways to convincingly simulate them today. The process of designing and optimizing interactions between human and robot is essential to the field of Human-Robot Interaction (HRI), a discipline dedicated to ensuring these technologies are safe, effective, and accepted by the public. However, current practices for prototyping these interactions are often hindered by complex technical requirements and inconsistent methodologies.
+To build the social robots of tomorrow, researchers must study how people respond to robot behavior today. That requires interactions that feel real even when autonomy is incomplete. The process of designing and optimizing interactions between human and robot is essential to HRI, a discipline dedicated to ensuring these technologies are safe, effective, and accepted by the public \cite{Bartneck2024}. However, current practices for prototyping these interactions are often hindered by complex technical requirements and inconsistent methodologies.
 
-In a typical social robotics interaction, a robot operates autonomously based on pre-programmed behaviors. Because human interaction is inherently unpredictable, pre-programmed autonomy often fails to respond appropriately to subtle social cues, causing the interaction to degrade. To overcome this, researchers utilize the Wizard-of-Oz (WoZ) technique, where a human operator--the ``wizard''--controls the robot's actions in real-time, creating the illusion of autonomy. This allows for rapid prototyping and testing of interaction designs before the underlying artificial intelligence is fully matured.
+Social robotics focuses on robots designed for social interaction with humans, and it poses unique challenges for autonomy. In a typical social robotics interaction, a robot operates autonomously based on pre-programmed behaviors. Because human interaction is inherently unpredictable, pre-programmed autonomy often fails to respond appropriately to subtle social cues, causing the interaction to degrade.
 
-Despite its versaility, WoZ research faces two critical challenges. First, a high technical barrier prevents many non-programmers, such as experts in psychology or sociology, from conducting their own studies without engineering support. Second, the hardware landscape is highly fragmented. Researchers frequently build bespoke, ``one-off'' control interfaces for specific robots and specific experiments. These ad-hoc tools are rarely shared, making it difficult for the scientific community to replicate studies or verify findings. This has led to a replication crisis in HRI, where a lack of standardized tooling undermines the reliability of the field's body of knowledge.
+To overcome this limitation, researchers use the Wizard-of-Oz (WoZ) technique. The name references L. Frank Baum's story \cite{Baum1900}, in which the "great and powerful" Oz is revealed to be an ordinary person operating machinery behind a curtain, creating an illusion of magic. In HRI, the wizard similarly creates an illusion of robot intelligence from behind the scenes. Consider a scenario where a researcher wants to test whether a robot tutor can effectively encourage student subjects during a learning task. Rather than building a complete autonomous system with speech recognition, natural language understanding, and emotion detection, the researcher uses a WoZ setup: a human operator (the ``wizard'') sits in a separate room, observing the interaction through cameras and microphones. When the subject appears frustrated, the wizard makes the robot say an encouraging phrase and perform a supportive gesture. To the subject, the robot appears to be acting autonomously, responding naturally to the subject's emotional state. This methodology allows researchers to rapidly prototype and test interaction designs, gathering valuable data about human responses before investing in the development of complex autonomous capabilities.
 
-\section{HRIStudio Overview}
+Despite its versatility, WoZ research faces two critical challenges. The first is \emph{The Accessibility Problem}: a high technical barrier prevents many non-programmers, such as experts in psychology or sociology, from conducting their own studies without engineering support. The second is \emph{The Reproducibility Problem}: the hardware landscape is highly fragmented, and researchers frequently build custom control interfaces for specific robots and experiments. These tools are rarely shared, making it difficult for the scientific community to replicate results or compare findings across labs.
 
-To address these challenges, this thesis presents HRIStudio, a web-based platform designed to manage the entire lifecycle of a WoZ experiment: from interaction design, through live execution, to final analysis.
+\section{Proposed Approach}
 
-HRIStudio is built on three core design principles: disciplinary accessibility, scientific reproducibility, and platform sustainability. To achieve accessibility, the platform replaces complex code with a visual, drag-and-drop interface, allowing domain experts to design interaction flows much like creating a storyboard. To ensure reproducibility, HRIStudio enforces a structured experimental workflow that acts as a ``smart co-pilot'' for the wizard. It guides them through a standardized script to minimize human error while automatically logging synchronized data streams for analysis. Finally, unlike tools tightly coupled to specific hardware, HRIStudio utilizes a robot-agnostic architecture to ensure sustainability. This design ensures that the platform remains a viable tool for the community even as individual robot platforms become obsolete.
+To address the accessibility and reproducibility problems in WoZ-based HRI research, I propose a web-based software framework that integrates three key capabilities. First, the framework must provide an intuitive interface for experiment design that does not require programming expertise, enabling domain experts from psychology, sociology, or other fields to create interaction protocols independently. Second, it must enforce methodological rigor during experiment execution by guiding the wizard through standardized procedures and preventing deviations from the experimental script that could compromise validity. Third, it must be platform-agnostic, meaning the same experiment design can be reused across different robot hardware as technology evolves.
+
+This approach represents a shift from the current paradigm of custom, robot-specific tools toward a unified platform that can serve as shared infrastructure for the HRI research community. By treating experiment design, execution, and analysis as distinct but integrated phases of a study, such a framework can systematically address both technical barriers and sources of variability that currently limit research quality and reproducibility.
+
+The implementation of this approach, realized as HRIStudio, demonstrates the feasibility of web-based control for real-time robot interaction studies. HRIStudio is an open-source proof-of-concept implementation that validates the proposed framework and serves as the reference system evaluated in this thesis.
 
 \section{Research Objectives}
 
-The primary objective of this work is to demonstrate that a unified, web-based software framework can significantly improve both the accessibility and reproducibility of HRI research. Specifically, this thesis aims to develop a production-ready platform, validate its accessibility for non-programmers, and assess its impact on experimental rigor.
+This thesis builds upon foundational work presented in two prior peer-reviewed publications. Prof. Perrone and I first introduced the conceptual framework for HRIStudio at the 2024 IEEE International Conference on Robot and Human Interactive Communication (RO-MAN) \cite{OConnor2024}, establishing the vision for a collaborative, web-based platform. Subsequently, we published the detailed system architecture and a first prototype at RO-MAN 2025 \cite{OConnor2025}, validating the technical feasibility of web-based robot control. These publications form the foundation upon which this thesis asks its central research question: can a unified, web-based software framework for Wizard-of-Oz experiments measurably improve both disciplinary accessibility and scientific reproducibility of Human-Robot Interaction research compared to existing platform-specific tools?
 
-First, this work translates the foundational architecture proposed in prior publications into a stable, full-featured software platform capable of supporting real-world experiments. Second, through a formal user study, we evaluate whether HRIStudio allows participants with no robotics experience to successfully design and execute a robot interaction, comparing their performance against industry-standard software. Finally, we quantify the impact of the platform's guided execution features on the consistency of wizard behavior and the accuracy of data collection.
+To answer this question, this thesis validates the framework through a user study, in which I implement the architectural concepts from the prior work in a complete, functional software platform and evaluate it with real users. The study compares setup effort, protocol adherence, and usability between HRIStudio and a representative baseline. The successful demonstration of this approach would provide evidence that thoughtful software infrastructure can lower barriers to entry in HRI while simultaneously improving the methodological rigor of the field.
 
-This work builds upon preliminary concepts reported in two peer-reviewed publications \cite{OConnor2024, OConnor2025}. It extends that research by delivering the complete implementation of the system and a comprehensive empirical evaluation of its efficacy.
+\section{Chapter Summary}
+
+This chapter has established the context and objectives for this thesis. I identified two critical challenges facing WoZ-based HRI research. The first is the accessibility problem: high technical barriers limit participation by non-programmers. The second is the reproducibility problem: fragmented tooling makes results difficult to replicate across labs. I proposed a web-based framework approach that addresses these challenges through intuitive design interfaces, enforced experimental protocols, and platform-agnostic architecture. Finally, I articulated a central research question and outlined how this thesis validates that approach through implementation and a user study. To validate this approach, the next chapters establish the technical and methodological foundations.

thesis/chapters/02_background.tex

@@ -1,20 +1,47 @@
-\chapter{Background and Context}
+\chapter{Background and Related Work}
 \label{ch:background}
 
-\section{Human-Robot Interaction and Wizard-of-Oz}
+This chapter provides the necessary context for understanding the challenges addressed by this thesis. I survey the landscape of existing WoZ platforms, analyze their capabilities and limitations, and establish requirements that a modern infrastructure should satisfy. Finally, I position this thesis relative to prior work on this topic.
 
-HRI is a multidisciplinary field dedicated to understanding, designing, and evaluating robotic systems for use by or with humans. Unlike industrial robotics, where safety often means physical separation, social robotics envisions a future where robots operate in shared spaces, collaborating with people in roles ranging from healthcare assistants and educational tutors to customer service agents.
+As established in Chapter~\ref{ch:intro}, the WoZ technique enables researchers to prototype and test robot interaction designs before autonomous capabilities are developed. To understand how the proposed framework advances this research paradigm, I review the existing landscape of WoZ platforms, identify their limitations relative to disciplinary needs, and establish requirements for a more comprehensive approach. HRI is fundamentally a multidisciplinary field which brings together engineers, psychologists, designers, and domain experts from various application areas \cite{Bartneck2024}. Yet two challenges have historically limited participation from non-technical researchers. First, each research group builds custom software for specific robots, creating tool fragmentation across the field. Second, high technical barriers prevent many domain experts from conducting independent studies.
 
-For these interactions to be effective, robots must exhibit social intelligence. They must recognize and respond to human social cues--such as speech, gaze, and gesture--in a manner that is natural and intuitive. However, developing the artificial intelligence required for fully autonomous social interaction is an immense technical challenge. Perception systems often struggle in noisy environments, and natural language understanding remains an area of active research.
+\section{Existing WoZ Platforms and Tools}
 
-To bridge the gap between current technical limitations and desired interaction capabilities, researchers employ the WoZ technique. In a WoZ experiment, a human operator (the ``wizard'') remotely controls the robot's behaviors, unaware to the study participant. To the participant, the robot appears to be acting autonomously. This methodology allows researchers to test hypotheses about human responses to robot behaviors without needing to solve the underlying engineering challenges first.
+Over the last two decades, multiple frameworks to support and automate the WoZ paradigm have been reported in the literature. These frameworks can be broadly categorized based on their primary design emphases, generality, and the methodological practices they encourage. Foundational work by Steinfeld et al. \cite{Steinfeld2009} articulated the methodological importance of WoZ simulation, distinguishing between the human simulating the robot (Wizard of Oz) and the robot simulating the human. In the latter case (Oz of Wizard), the robot acts as if controlled by a person when it is actually autonomous. This distinction has influenced how subsequent tools approach the design and execution of WoZ experiments.
 
-\section{Prior Work}
+Early platform-agnostic tools focused on providing robust, flexible interfaces for technically sophisticated users. These systems were designed to work with multiple robot types rather than a single hardware platform. Polonius \cite{Lu2011}, built on the Robot Operating System (ROS) \cite{Quigley2009}, exemplifies this generation. It provides a graphical interface for defining finite state machine scripts that control robot behaviors, with integrated logging capabilities to streamline post-experiment analysis. The system was explicitly designed to enable robotics engineers to create experiments that their non-technical collaborators could then execute. However, the initial setup and configuration still required substantial programming expertise. Similarly, OpenWoZ \cite{Hoffman2016} introduced a cloud-based, runtime-configurable architecture using web protocols. Its design allows multiple operators or observers to connect simultaneously, and its plugin system enables researchers to extend functionality such as adding new robot behaviors or sensor integrations. Most importantly, OpenWoZ allows runtime modification of robot behaviors, enabling wizards to deviate from scripts when unexpected situations arise. While architecturally sophisticated and highly flexible, OpenWoZ requires programming knowledge to create custom behaviors and configure experiments, creating an accessibility problem for non-technical researchers.
 
-This thesis represents the culmination of a multi-year research effort to address critical infrastructure gaps in the HRI community. The ideas presented here build upon a foundational trajectory established through two peer-reviewed publications.
+A second wave of tools shifted focus toward usability, often achieving accessibility by coupling tightly with specific hardware platforms. WoZ4U \cite{Rietz2021} was explicitly designed as an ``easy-to-use'' tool for conducting experiments with Aldebaran's Pepper robot. It provides an intuitive graphical interface that allows non-programmers to design interaction flows, and it successfully lowers the technical barrier. However, this usability comes at the cost of generalizability. WoZ4U is unusable with other robot platforms, and manufacturer-provided software follows a similar pattern.
 
-We first introduced the concept for HRIStudio as a Late-Breaking Report at the 2024 IEEE International Conference on Robot and Human Interactive Communication (RO-MAN) \cite{OConnor2024}. In that work, we identified the lack of accessible tooling as a primary barrier to entry in HRI and proposed the high-level vision of a web-based, collaborative platform. We established the core requirements for the system: disciplinary accessibility, robot agnosticism, and reproducibility.
+Choregraphe \cite{Pot2009}, developed by Aldebaran Robotics for the NAO and Pepper robots, offers a visual programming environment based on connected behavior boxes. Researchers can create complex interaction flows using drag-and-drop blocks without writing code in traditional programming languages. However, when new robot platforms emerge or when hardware becomes obsolete, tools like Choregraphe and WoZ4U lose their utility. Pettersson and Wik, in their review of WoZ tools \cite{Pettersson2015}, note that platform-specific systems often fall out of use as technology evolves, forcing researchers to constantly rebuild their experimental infrastructure.
 
-Following the initial proposal, we published the detailed system architecture and preliminary prototype as a full paper at RO-MAN 2025 \cite{OConnor2025}. That publication validated the technical feasibility of our web-based approach, detailing the communication protocols and data models necessary to support real-time robot control using standard web technologies.
+Recent years have seen renewed interest in comprehensive WoZ frameworks. Gibert et al. \cite{Gibert2013} developed the Super Wizard of Oz (SWoOZ) platform. This system integrates facial tracking, gesture recognition, and real-time control capabilities to enable naturalistic human-robot interaction studies. Virtual and augmented reality have also emerged as complementary approaches to WoZ. Helgert et al. \cite{Helgert2024} demonstrated how VR-based WoZ environments can simplify experimental setup while providing researchers with precise control over environmental conditions and high fidelity data collection.
 
-While those prior publications established the ``what'' and the ``how'' of HRIStudio, this thesis focuses on the realization and validation of the platform. We extend our previous research in two key ways. First, we move beyond prototypes to deliver a complete, production-ready software platform (v1.0), resolving complex engineering challenges related to stability, latency, and deployment. Second, and crucially, we provide the first rigorous user study of the platform. By comparing HRIStudio against industry-standard tools, this work provides empirical evidence to support our claims of improved accessibility and experimental consistency.
+This expanding landscape reveals a persistent fundamental gap in the design space of WoZ tools. Flexible, general-purpose platforms like Polonius and OpenWoZ offer powerful capabilities but present high technical barriers. Accessible, user-friendly tools like WoZ4U and Choregraphe lower those barriers but sacrifice cross-platform compatibility and longevity. Newer approaches such as VR-based frameworks attempt to bridge this gap, yet no existing tool successfully combines accessibility, flexibility, deployment portability, and built-in methodological rigor. By methodological rigor, I refer to systematic features that guide experimenters toward best practices like standardized protocols, comprehensive logging, and reproducible experimental designs.
+
+Moreover, few platforms directly address the methodological concerns raised by systematic reviews of WoZ research. Riek's influential analysis \cite{Riek2012} of 54 HRI studies uncovered widespread inconsistencies in how wizard behaviors were controlled and reported. Very few studies documented standardized wizard training procedures or measured wizard error rates, raising questions about internal validity. The tools themselves often exacerbate this problem: poorly designed interfaces increase cognitive load on wizards, leading to timing errors and behavioral inconsistencies that can confound experimental results. Recent work by Strazdas et al. \cite{Strazdas2020} further demonstrates the importance of careful interface design in WoZ systems, showing that intuitive wizard interfaces directly improve both the quality of robot behavior and the reliability of collected data.
+
+\section{Requirements for Modern WoZ Infrastructure}
+
+This thesis represents the culmination of a multi-year research effort to develop infrastructure that addresses the challenges identified in the WoZ platform landscape. Based on the analysis of existing platforms and identified methodological gaps, I derived requirements for a modern WoZ research infrastructure. Through our preliminary work \cite{OConnor2024}, we identified six critical capabilities that a comprehensive platform should provide:
+
+\begin{description}
+\item[R1: Integrated workflow.] All phases of the experimental workflow (design, execution, and analysis) should be integrated within a single unified environment to minimize context switching and tool fragmentation.
+\item[R2: Low technical barrier.] Creating interaction protocols should require minimal to no programming expertise, enabling domain experts from psychology, education, or other fields to work independently \cite{Bartneck2024}.
+\item[R3: Real-time control.] The system must support fine-grained, responsive real-time control during live experiment sessions across a variety of robotic platforms.
+\item[R4: Automated logging.] All actions, timings, and sensor data should be automatically logged with synchronized timestamps to facilitate analysis.
+\item[R5: Platform agnosticism.] The architecture should decouple experimental logic from robot-specific implementations. This allows experiments designed for one robot type to be adapted to others, ensuring the platform remains viable as hardware evolves.
+\item[R6: Collaborative support.] Multiple team members should be able to contribute to experiment design and review execution data, supporting truly interdisciplinary research.
+\end{description}
+
+To the best of my knowledge, no existing platform satisfies all six requirements. Most critically, the trade-off between accessibility and flexibility remains unresolved, and few tools embed methodological best practices directly into their design, like training wheels on a bicycle, guiding experimenters to follow sound methodology by default.
+
+The ideas presented here build upon prior work established in two peer-reviewed publications. We first introduced the concept for HRIStudio as a Late-Breaking Report at the 2024 IEEE International Conference on Robot and Human Interactive Communication (RO-MAN) \cite{OConnor2024}. In that position paper, we identified the lack of accessible tooling as a primary barrier to entry in HRI and proposed the high-level vision of a web-based, collaborative platform. We established the core requirements listed above and argued for a web-based approach to achieve them.
+
+Following the initial proposal, we published the detailed system architecture and preliminary prototype as a full paper at RO-MAN 2025 \cite{OConnor2025}. That publication validated the technical feasibility of our approach, detailing the communication protocols, data models, and plugin architecture necessary to support real-time robot control using standard web technologies while maintaining platform independence.
+
+While those prior publications established the conceptual framework and technical architecture, this thesis focuses on the realization and empirical validation of the platform. I extend that research in two key ways. First, I implement a functional software system that addresses engineering challenges related to stability, latency, and deployment, providing a minimum viable product for evaluation. Second, I provide a rigorous user study comparing the proposed framework against a representative baseline tool. This empirical evaluation provides evidence to support the claim that thoughtful infrastructure design can improve both accessibility and reproducibility in HRI research.
+
+\section{Chapter Summary}
+
+This chapter has established the technical and methodological context for this thesis. Existing WoZ platforms fall into two categories: general-purpose tools like Polonius and OpenWoZ that offer flexibility but high technical barriers, and platform-specific systems like WoZ4U and Choregraphe that prioritize usability at the cost of cross-platform generality. Recent approaches such as VR-based frameworks attempt to bridge this gap, yet to the best of my knowledge, no existing tool successfully combines accessibility, flexibility, and embedded methodological rigor. Based on this landscape analysis, I identified six critical requirements for modern WoZ infrastructure (R1-R6): integrated workflows, low technical barriers, real-time control across platforms, automated logging, platform-agnostic design, and collaborative support. These requirements form the foundation for evaluating how the proposed framework advances the state of WoZ research infrastructure. The next chapter examines the broader reproducibility challenges that justify why these requirements are essential.

thesis/chapters/03_related_work.tex

@@ -1,18 +0,0 @@
-\chapter{Related Work and State of the Art}
-\label{ch:related_work}
-
-\section{Existing Frameworks}
-
-The HRI community has a long history of developing custom tools to support WoZ studies. Early efforts focused on providing robust interfaces for technical users. For example, Polonius \cite{Lu2011} was designed to give robotics engineers a flexible way to create experiments for their collaborators, emphasizing integrated logging to streamline analysis. Similarly, OpenWoZ \cite{Hoffman2016} introduced a cloud-based, runtime-configurable architecture that allowed researchers to modify robot behaviors on the fly. These tools represented significant advancements in experimental infrastructure, moving the field away from purely hard-coded scripts. However, they largely targeted users with significant technical expertise, requiring knowledge of specific programming languages or network protocols to configure and extend.
-
-\section{General vs. Domain-Specific Tools}
-
-A recurring tension in the design of HRI tools is the trade-off between specialization and generalizability. Some tools prioritize usability by coupling tightly with specific hardware. WoZ4U \cite{Rietz2021}, for instance, provides an intuitive graphical interface specifically for the Pepper robot, making it accessible to non-technical researchers but unusable for other platforms. Manufacturer-provided software like Choregraphe \cite{Pot2009} for the NAO robot follows a similar pattern: it offers a powerful visual programming environment but locks the user into a single vendor's ecosystem. Conversely, generic tools like Ozlab seek to support a wide range of devices but often struggle to maintain relevance as hardware evolves \cite{Pettersson2015}. This fragmentation forces labs to constantly switch tools or reinvent infrastructure, hindering the accumulation of shared methodological knowledge.
-
-\section{Methodological Critiques}
-
-Beyond software architecture, the methodological rigor of WoZ studies has been a subject of critical review. In a seminal systematic review, Riek \cite{Riek2012} analyzed 54 HRI studies and uncovered a widespread lack of consistency in how wizard behaviors were controlled and reported. The review noted that very few researchers reported standardized wizard training or measured wizard error rates, raising concerns about the internal validity of many experiments. This lack of rigor is often exacerbated by the tools themselves; when interfaces are ad-hoc or poorly designed, they increase the cognitive load on the wizard, leading to inconsistent timing and behavior that can confound study results.
-
-\section{Research Gaps}
-
-Despite the rich landscape of existing tools, a critical gap remains for a platform that is simultaneously accessible, reproducible, and sustainable. Existing accessible tools are often too platform-specific to be widely adopted, while flexible, general-purpose frameworks often present a prohibitively high technical barrier. Furthermore, few tools directly address the methodological crisis identified by Riek by enforcing standardized protocols or actively guiding the wizard during execution. HRIStudio aims to fill this void by providing a web-based, robot-agnostic platform that not only lowers the barrier to entry for interdisciplinary researchers but also embeds methodological best practices directly into the experimental workflow.

thesis/chapters/03_reproducibility.tex

@@ -0,0 +1,38 @@
+\chapter{Reproducibility Challenges in WoZ-based HRI Research}
+\label{ch:reproducibility}
+
+Having established the landscape of existing WoZ platforms and their limitations, I now examine the factors that make WoZ experiments difficult to reproduce and how software infrastructure can address them. This chapter analyzes the sources of variability in WoZ studies and examines how current practices in infrastructure and reporting contribute to reproducibility problems. Understanding these challenges is essential for designing a system that supports experimentation at scale while remaining scientifically rigorous.
+
+\section{Sources of Variability}
+
+Reproducibility in experimental research requires that independent investigators can obtain consistent results when following the same procedures. In WoZ-based HRI studies, however, multiple sources of variability can compromise this goal. The wizard is simultaneously the strength and weakness of the WoZ paradigm. While human control enables sophisticated, adaptive interactions, it also introduces inconsistency. Consider a wizard conducting multiple trials of the same experiment with different participants. Even with a detailed script, the wizard may vary in timing, with delays between a participant's action and the robot's response fluctuating based on the wizard's attention, fatigue, or interpretation of when to act. When a script allows for choices, different wizards may make different selections, or the same wizard may act differently across trials. Furthermore, a wizard may accidentally skip steps, trigger actions in the wrong order, or misinterpret experimental protocols.
+
+Riek's systematic review \cite{Riek2012} found that very few published studies reported measuring wizard error rates or providing standardized wizard training. Without such measures, it becomes impossible to determine whether experimental results reflect the intended interaction design or inadvertent variations in wizard behavior.
+
+Beyond wizard behavior, the custom nature of many WoZ control systems introduces technical variability. When each research group builds custom software for each study, several problems arise. Custom interfaces may have undocumented capabilities, hidden features, default behaviors, or timing characteristics researchers never formally describe. Software tightly coupled to specific robot models or operating system versions may become unusable when hardware or software is upgraded or replaced. Each system logs data differently, with different file formats, different levels of granularity, and different choices about what to record. This fragmentation means that replicating a study often requires not just following an experimental protocol but also reverse-engineering or rebuilding the original software and hardware infrastructure.
+
+Even when researchers intend for their work to be reproducible, practical constraints on publication length lead to incomplete documentation. Papers often omit exact timing parameters. Authors leave decision rules for wizard actions unspecified and fail to report details of the wizard interface. Specifications of data collection, including which sensor streams were recorded and at what sampling rate, frequently go missing. Without this information, other researchers cannot faithfully recreate the experimental conditions, limiting both direct replication and conceptual extensions of prior work.
+
+\section{Infrastructure Requirements for Enhanced Reproducibility}
+
+Based on this analysis, I identify specific ways that software infrastructure can mitigate reproducibility challenges:
+
+\begin{enumerate}
+\item \textbf{Guided wizard execution.} Rather than merely providing tools for wizard control, an ideal WoZ platform should actively guide wizards through scripted procedures. This means presenting actions in a prescribed sequence to prevent out-of-order execution, highlighting the current step in the protocol, recording any deviations from the script as explicit events in the data log, and supporting repeatable decision logic through clearly defined conditional branches. By constraining wizard behavior within the bounds of the experimental design, the system reduces unintended variability across trials and participants.
+
+\item \textbf{Comprehensive automatic logging.} Manual data collection is error-prone and often incomplete. The platform should automatically record every action triggered by the wizard with precise timestamps, all robot sensor data and state changes, and timing information indicating when actions were requested, when they began executing, and when they completed. The full experimental protocol should be embedded in each log file so that researchers can recover the exact script used for any session. Note that recording precise timestamps does not imply that trials must have identical timing, since human-robot interactions naturally vary in duration; rather, the system captures what actually occurred for later analysis.
+
+\item \textbf{Self-documenting protocol specifications.} The protocol specification itself should serve as documentation. When interaction protocols are defined using structured formats such as visual flowcharts or declarative scripts rather than imperative code, they become simultaneously executable and human-readable. Researchers can then share complete, unambiguous descriptions of their experimental procedures alongside their results.
+
+\item \textbf{Platform-independent abstractions.} To maximize the lifespan and transferability of experimental designs, the platform must separate the high-level control logic, the sequence of wizard and robot actions, from the low-level details of how specific robots execute those behaviors. This abstraction allows experiments designed for one robot to be more easily adapted to another, extending the reproducibility of interaction designs even when the original hardware becomes obsolete.
+\end{enumerate}
+
+
+
+\section{Connecting Reproducibility Challenges to Infrastructure Requirements}
+
+The reproducibility challenges identified above directly motivate the infrastructure requirements established in Chapter~\ref{ch:background}. Inconsistent wizard behavior creates the need for enforced experimental protocols (R1, R2) that guide wizards systematically. The lack of comprehensive data undermines analysis, motivating automatic logging requirements (R4). Technical fragmentation violates platform agnosticism (R5). Each lab builds custom software tied to specific hardware, and these custom systems become obsolete when hardware evolves. Incomplete documentation reflects the need for self-documenting protocol specifications (R1, R2) that are simultaneously executable and shareable. As Chapter~\ref{ch:background} demonstrated, no existing platform simultaneously satisfies all six requirements. Addressing this gap requires rethinking how WoZ infrastructure is designed, prioritizing reproducibility and methodological rigor as first-class design goals rather than afterthoughts.
+
+\section{Chapter Summary}
+
+This chapter has analyzed the reproducibility challenges inherent in WoZ-based HRI research, identifying three primary sources of variability: inconsistent wizard behavior, fragmented technical infrastructure, and incomplete documentation. Rather than treating these challenges as inherent to the WoZ paradigm, I showed how each stems from gaps in current infrastructure. Software design can systematically mitigate these challenges through enforced experimental protocols, comprehensive automatic logging, self-documenting experiment designs, and platform-independent abstractions. These design goals directly address the six infrastructure requirements identified in Chapter~\ref{ch:background}. The following chapters describe the design, implementation, and empirical evaluation of a system that prioritizes reproducibility as a foundational design principle from inception.

thesis/chapters/04_reproducibility.tex

@@ -1,11 +0,0 @@
-\chapter{Reproducibility Challenges in WoZ-based HRI Research}
-\label{ch:reproducibility}
-
-\section{Sources of Variability}
-% TODO
-
-\section{Infrastructure and Reporting}
-% TODO
-
-\section{Platform Requirements}
-% TODO

thesis/chapters/04_system_design.tex

@@ -0,0 +1,85 @@
+\chapter{System Design}
+\label{ch:design}
+
+The previous chapters established the motivation for a web-based WoZ platform and identified six critical requirements for modern HRI research infrastructure. This chapter describes the design of HRIStudio, focusing on how the system architecture and experimental workflow implement these requirements. In this chapter I go over three key design decisions: the hierarchical structure of experiment specifications, the modular interface architecture, and the data flow during experiment execution.
+
+\section{Hierarchical Organization of Experiments}
+
+To address the need for self-documenting, executable experiment specifications (R1, R2), HRIStudio introduces a hierarchical organization of elements that allows researchers to express WoZ studies at multiple levels of abstraction. This structure enables experiment designs to be simultaneously intuitive for researchers to create and precise enough for the system to execute.
+
+At the top level, researchers create a \emph{study} element that defines the overall research context, including metadata about the research project, collaborators, and general experimental conditions. A study contains two types of subordinate elements: \emph{experiment} elements represent reusable protocols (e.g., ``The Interactive Storyteller'' experiment), each specifying the sequence of steps and actions that define an interaction design. \emph{Trial} elements represent specific instantiations where a particular participant executes a particular experiment protocol. This distinction between protocol (experiment) and execution instance (trial) allows researchers to manage multiple repetitions of the same protocol (trials with different participants) while maintaining clear traceability.
+
+Each experiment protocol comprises a sequence of \emph{step} elements, which model distinct phases of the interaction design. For example, an experiment protocol might define steps such as ``Introduction,'' ``Learning Task,'' and ``Closing.'' Within each step, researchers define one or more \emph{action} elements that are the atomic units of the experimental procedure. Actions can be directed at the wizard (e.g., ``Wait for subject to finish task, then say encouraging phrase'') or at the robot (e.g., ``Move arm to point, play audio greeting, wait for subject response''). 
+
+\begin{figure}[htbp]
+\centering
+\begin{tikzpicture}[
+	nodebox/.style={rectangle, draw=black, thick, fill=gray!15, minimum width=2.8cm, minimum height=0.8cm, align=center, font=\small},
+	nodeboxdark/.style={rectangle, draw=black, thick, fill=gray!30, minimum width=2.8cm, minimum height=0.8cm, align=center, font=\small},
+	arrow/.style={->, thick}]
+
+	\node[nodebox] (study) at (0, 3.4) {Study};
+	\node[nodebox] (experiment) at (0, 2.1) {Experiment};
+
+	\node[nodebox] (step1) at (-3.0, 0.7) {Step};
+	\node[nodebox] (step2) at (0, 0.7) {Step};
+	\node[nodebox] (step3) at (3.0, 0.7) {Step};
+
+	\node[nodeboxdark] (action1) at (-4.5, -0.7) {Action};
+	\node[nodeboxdark] (action2) at (-1.5, -0.7) {Action};
+
+	\draw[arrow] (study.south) -- (experiment.north);
+	\draw[arrow] (experiment.south) -- (step1.north);
+	\draw[arrow] (experiment.south) -- (step2.north);
+	\draw[arrow] (experiment.south) -- (step3.north);
+	\draw[arrow] (step1.south) -- (action1.north);
+	\draw[arrow] (step1.south) -- (action2.north);
+
+\end{tikzpicture}
+\caption{Hierarchy of experiment specifications from study-level context to atomic actions.}
+\label{fig:experiment-hierarchy}
+\end{figure}
+
+This hierarchical structure serves multiple purposes. First, it permits researchers to design experiment protocols without programming knowledge, using visual or declarative specifications at each level. Second, it naturally maps to the temporal structure of a trial session, making the protocol easy to follow during live execution. Third, it provides a foundation for comprehensive logging: each action executed during a trial can be recorded with precise timestamps and outcomes, making the experimental trace reproducible and analyzable. Fourth, the separation of experiment (protocol) from trial (execution) enables researchers to run the same protocol with different participants, facilitating direct comparison across trials while maintaining clear record-keeping of which participant ran which protocol.
+
+\section{Modular Interface Architecture}
+
+To support different roles in an experiment while maintaining coherent data flow (R3, R4, R6), HRIStudio implements three primary user interfaces, each optimized for a specific phase of the research lifecycle.
+
+\subsection{Design Interface}
+
+The \emph{Design} interface enables researchers to construct experiment specifications using drag-and-drop visual programming. Rather than requiring researchers to write code or complex configuration files, the interface presents a canvas where researchers can assemble pre-built action components into sequences. Components represent common tasks such as robot movements, speech synthesis, wizard instructions, and conditional logic. Researchers configure each component's parameters through property panels that provide contextual guidance and examples of best practices.
+
+By treating experiment design as a visual specification task, the interface lowers technical barriers (R2) and ensures that the resulting protocol specification is human-readable and shareable alongside research results. The specification is stored in a structured, machine-readable format that can be both displayed as a flowchart and executed by the platform's runtime.
+
+\subsection{Execute Interface}
+
+During live trials, the Execute interface provides a synchronized live view of experiment execution. The wizard sees the current step and available actions, guiding the wizard through the experimental protocol while allowing flexibility for spontaneous, contextual responses. Actions are presented sequentially, but the wizard can manually trigger specific actions based on participant responses, ensuring that the interaction remains natural and responsive rather than rigidly scripted.
+
+The Execute view includes manual controls for unscripted behaviors such as additional robot movements, speech, or gestures. These unscripted actions are recorded in the trial log as explicit deviations from the protocol, enabling researchers to later analyze both scripted and improvised interactions. This design balances the need for consistent, monitored behavior (which supports reproducibility) with the flexibility required for realistic human-robot interactions.
+
+Additional researchers can simultaneously access this same synchronized live view through the platform's Dashboard by selecting a live trial to ``spectate.'' Multiple researchers observing the same trial view the identical synchronized display of the wizard's controls, participant interactions, and robot state, supporting real-time collaboration and interdisciplinary observation (R6). Observers can take notes and mark significant moments without interfering with the wizard's control or the participant's experience.
+
+\subsection{Analysis Interface}
+
+After a live experiment session, the \emph{Analysis} interface enables researchers to review all recorded data streams in synchronized fashion. This includes video of the human-robot interaction, audio of speech and ambient sounds, logged actions and state changes, and sensor data from the robot. Researchers can scrub through the recording, mark significant events with annotations, and export selected segments or annotations for analysis.
+
+The analysis interface directly supports reproducibility (R4) by making the complete experimental trace accessible and analyzable. Researchers can verify that the protocol was executed as intended, examine deviations from the protocol, and compare execution traces across multiple sessions to verify consistency.
+
+\section{Event-Driven Execution Model}
+
+To achieve real-time responsiveness while maintaining methodological rigor (R3, R5), HRIStudio uses an event-driven execution model rather than a time-driven one. In a time-driven approach, the system would advance through actions on a fixed schedule, leading to rigid, potentially unnatural interaction timing. In contrast, the event-driven model allows the wizard to trigger or advance actions based on the perceived state of the human participant.
+
+This approach has several implications. First, not all sessions of the same experiment will have identical timing or duration; the length of a learning task, for example, depends on the participant's progress. The system records the actual timing of actions, permitting researchers to capture these natural variations in their data. Second, the event-driven model enables the wizard to respond contextually without departing from the protocol; the wizard remains guided by the sequence of available actions while having control over when to advance based on participant cues.
+
+The system enforces protocol consistency by constraining the wizard's choices to the set of actions defined in the protocol specification, while recording all choices made and any deviations. This design directly addresses the reproducibility challenge of inconsistent wizard behavior by making the wizard's degrees of freedom explicit and logged.
+
+\section{Data Flow and Infrastructure Implementation}
+
+The overall data flow through HRIStudio follows the experimental workflow from design through analysis. During the design phase, researchers create experiment specifications that are stored in the system database. During a live experiment session, the system manages bidirectional communication between the wizard's interface and the robot control layer. All actions, sensor data, and events are streamed to a data logging service that stores complete session records. After the experiment, researchers access these records through the Analysis interface for analysis.
+
+This architecture satisfies the infrastructure requirements by design. The integrated workflow (R1) flows naturally through design $\rightarrow$ execution $\rightarrow$ analysis. Low technical barriers (R2) are achieved through the visual Design interface. Real-time control (R3) is supported by responsive event-driven execution. Automated logging (R4) is built-in at the system level. Platform agnosticism (R5) is achieved by decoupling the high-level action specification from robot-specific control commands in the ROS interface. Collaborative support (R6) is enabled through shared views and multi-user access to all system components.
+
+\section{Chapter Summary}
+
+This chapter has described the system design of HRIStudio, with emphasis on how architectural choices directly implement the infrastructure requirements identified in Chapter~\ref{ch:background}. The hierarchical organization of experiment specifications enables intuitive, executable design. The modular interface architecture separates concerns across design, execution, and analysis phases while maintaining data coherence. The event-driven execution model balances protocol consistency with realistic interaction dynamics. The integrated data flow ensures that reproducibility is supported by design rather than by afterthought. The following chapter describes the implementation of these design principles using specific technologies and architectural components.

thesis/chapters/05_implementation.tex

@@ -0,0 +1,216 @@
+\chapter{Implementation}
+\label{ch:implementation}
+
+Chapter~\ref{ch:design} described the conceptual design of HRIStudio. This chapter addresses the realization of these design principles, discussing the core technologies used, the system architecture that integrates these technologies, and the current state of the implementation. The implementation demonstrates the feasibility of the approach proposed in earlier chapters while identifying technical challenges that inform the roadmap for future development.
+
+\section{Core Implementation Decisions}
+
+HRIStudio is implemented as a web application. Researchers access it through a standard web browser without installing specialized software. This design decision directly addresses requirement R2 (low technical barrier) by eliminating installation complexity and ensuring the system works identically on different operating systems. This section describes the key implementation choices and the rationale behind them.
+
+\subsection{Web-Based Architecture}
+
+The choice to build HRIStudio as a web application was driven by three factors. First, web browsers are universally available, so researchers do not need to install custom software or manage dependencies. Second, web applications naturally support collaboration: multiple team members can access the same experiment data and observe live trials simultaneously from different locations. Third, web deployment simplifies updates: when I fix bugs or add features, all users immediately receive the improvements without manual software updates.
+
+I chose to use the same programming language~\cite{TypeScript2024} across the entire system, including the user interface, the server logic, and the data access layer. This consistency reduces a common source of errors: when the structure of experiment data changes, inconsistencies between different parts of the system are detected automatically rather than causing runtime failures during live trials.
+
+\subsection{Data Storage Strategy}
+
+Experiment protocols and trial data are stored in a structured database that supports efficient queries, for example, retrieving all trials for a particular participant or comparing timing data across multiple sessions. However, video recordings and audio files are large and unstructured, so they are stored separately in a file storage system. This separation ensures that the database remains fast for common queries while still preserving complete multimedia records.
+
+\subsection{Robot Communication Layer}
+
+Rather than writing custom code to communicate with each robot's specific control system, HRIStudio uses the Robot Operating System (ROS)~\cite{Quigley2009} as an intermediary. ROS is a widely-adopted standard in robotics research that provides a common communication framework. This design decision means that any robot with ROS support can work with HRIStudio. For robots without native ROS support, researchers can write a small adapter, a much simpler task than integrating directly with HRIStudio's core code.
+
+\subsection{Plugin Architecture for Platform Agnosticism}
+
+A critical design decision was how to support diverse robot platforms without hardcoding knowledge of specific robots into HRIStudio. The robotics landscape is fragmented: researchers use various robots (NAO, Pepper, Fetch, custom platforms) that communicate in different ways.
+
+The solution is a plugin architecture. When designing an experiment, researchers work with abstract actions like ``speak this text'' or ``raise arm.'' The system does not need to know whether it is controlling a NAO robot, a Pepper robot, or a custom research platform. Instead, each robot is described by a plugin, a configuration file that maps abstract actions to the specific commands that robot understands.
+
+This separation has important consequences. First, researchers can create an interaction protocol without knowing which robot will ultimately execute it, enabling protocol reuse across different hardware. Second, when a research lab acquires a new robot, they can add support for it by writing a plugin rather than modifying HRIStudio itself. Third, the visual designer's palette of available actions is automatically populated from the loaded plugins, ensuring the interface reflects the actual capabilities of the current robot.
+
+The plugin architecture also treats control flow (branches, loops, conditional logic) the same way as robot actions. This uniformity allows researchers to mix logical decisions and physical robot behaviors freely when designing experiments.
+
+\begin{figure}[htbp]
+\centering
+\begin{tikzpicture}[
+    action/.style={rectangle, draw=black, thick, fill=gray!15, minimum width=2.2cm, minimum height=0.6cm, align=center, font=\small},
+    impl/.style={rectangle, draw=black, thick, fill=gray!30, minimum width=2.2cm, minimum height=0.7cm, align=center, font=\small},
+    arrow/.style={-, thick}]
+    
+    % First Y: speak()
+    \node[action] (a1) at (0, 7) {HRIStudio\\speak(text)};
+    \node[impl] (nao1) at (-2, 5) {NAO\\{\small /nao/tts}};
+    \node[impl] (pep1) at (2, 5) {Pepper\\{\small /pepper/say}};
+    \draw[arrow] (a1) -- (nao1);
+    \draw[arrow] (a1) -- (pep1);
+    
+    % Second Y: raise_arm()
+    \node[action] (a2) at (0, 3) {HRIStudio\\raise\_arm()};
+    \node[impl] (nao2) at (-2, 1) {NAO\\{\small /nao/arm}};
+    \node[impl] (pep2) at (2, 1) {Pepper\\{\small /pepper/gesture}};
+    \draw[arrow] (a2) -- (nao2);
+    \draw[arrow] (a2) -- (pep2);
+    
+    % Third Y: move_forward()
+    \node[action] (a3) at (0, -1) {HRIStudio\\move\_forward()};
+    \node[impl] (nao3) at (-2, -3) {NAO\\{\small /nao/move}};
+    \node[impl] (pep3) at (2, -3) {Pepper\\{\small /pepper/cmd\_vel}};
+    \draw[arrow] (a3) -- (nao3);
+    \draw[arrow] (a3) -- (pep3);
+    
+\end{tikzpicture}
+\caption{Plugin architecture: each abstract action branches to platform-specific implementations.}
+\label{fig:plugin-architecture}
+\end{figure}
+
+\subsection{Event-Driven Execution}
+
+During a trial, HRIStudio must balance two competing demands: following the experimental protocol precisely while allowing natural human-robot timing. The execution engine accomplishes this by waiting for specific events at designated points in the protocol. For example, if the protocol specifies ``wait for wizard to click Continue,'' the system pauses until that event occurs, regardless of how long it takes. This preserves the spontaneous, human-paced nature of interaction while ensuring the protocol structure is followed.
+
+Every action during a trial, including robot movements, wizard button clicks, sensor readings, and timing information, is immediately recorded with precise timestamps. This comprehensive logging happens automatically, without requiring researchers to instrument their experiments manually. The complete event record enables two critical capabilities: first, researchers can analyze exactly what happened during a trial without relying on memory or handwritten notes; second, the detailed event log makes trials reproducible by documenting not just what was supposed to happen, but what actually occurred.
+
+\subsection{Local Media Recording}
+
+Video and audio recording during trials must not interfere with the live interaction. To ensure this, recording happens locally in the researcher's web browser rather than streaming data to a remote server in real-time. The browser accumulates the video and audio data, then transfers the complete recordings to the server when the trial concludes. This approach prevents network delays or server processing from causing dropped video frames or degraded audio quality during the critical interaction period.
+
+The timestamps when recording starts and stops are logged alongside other trial events, ensuring that when researchers later review the video, they can see exactly what was happening in the experiment protocol at any given moment in the recording.
+
+\section{System Architecture and Data Flow}
+
+\subsection{Separation of architectural layers}
+
+HRIStudio's architecture separates the system into three distinct layers, each with a specific responsibility:
+
+\begin{enumerate}
+\item \textbf{User interface layer:} The visual interfaces (Design, Execute, Playback) run in the researcher's web browser. This layer handles user interactions, including clicking buttons, dragging experiment components, and viewing live trial status.
+\item \textbf{Application logic layer:} A server process manages experiment data, coordinates trial execution, authenticates users, and orchestrates communication between the interface and the robot.
+\item \textbf{Data and robot control layer:} This layer encompasses two responsibilities: long-term storage of experiment protocols and trial data; and direct communication with robot hardware.
+\end{enumerate}
+
+This separation provides several benefits. Different parts of the system can evolve independently; for example, improving the user interface does not require changes to robot control logic. The separation also clarifies responsibilities: the user interface should never directly command robot hardware; all robot actions flow through the application logic layer, which can enforce safety constraints and maintain consistent logging.
+
+\begin{figure}[htbp]
+\centering
+\begin{tikzpicture}[
+    layer/.style={rectangle, draw=black, thick, fill, minimum width=6.5cm, minimum height=1cm, align=center, text width=6.2cm},
+    arrow/.style={->, thick, line width=1.5pt}]
+    
+    % Layer 1: UI
+    \node[layer, fill=gray!15] (ui) at (0, 3.5) {
+        \textbf{User Interface}\\[0.1cm]
+        {\small Design, Execute, Playback}
+    };
+    
+    % Layer 2: Logic
+    \node[layer, fill=gray!30] (logic) at (0, 1.8) {
+        \textbf{Application Logic}\\[0.1cm]
+        {\small Execution, Authentication, Logger}
+    };
+    
+    % Layer 3: Data
+    \node[layer, fill=gray!45] (data) at (0, 0.1) {
+        \textbf{Data \& Robot Control}\\[0.1cm]
+        {\small Database, File Storage, ROS}
+    };
+    
+    % Arrows
+    \draw[arrow] (ui.south) -- (logic.north);
+    \draw[arrow] (logic.south) -- (data.north);
+    
+\end{tikzpicture}
+\caption{HRIStudio's three-layer architecture separates user interface, application logic, and data/robot control.}
+\label{fig:three-tier}
+\end{figure}
+
+\subsection{Data Flow During a Trial}
+
+The flow of data during a trial illustrates how the architectural layers coordinate:
+
+\begin{enumerate}
+\item A researcher creates an experiment protocol using the Design interface and initiates a trial.
+\item The application server loads the protocol and begins stepping through it, sending commands to the robot and waiting for events (wizard inputs, sensor readings, timeouts).
+\item Every action, both planned protocol steps and unexpected events, is immediately written to the trial log with precise timing information.
+\item The Execute interface continuously displays the current state, allowing the wizard and observers to monitor progress in real-time.
+\item When the trial concludes, all recorded media (video, audio) is transferred from the browser to the server and associated with the trial record.
+\item Later, the Analysis interface retrieves the stored trial data and reconstructs exactly what happened, synchronized with the video and audio recordings.
+\end{enumerate}
+
+This design ensures comprehensive documentation of every trial, supporting both fine-grained analysis and reproducibility. Researchers can review not just what they planned to happen, but what actually occurred, including timing variations and unexpected events.
+
+\begin{figure}[htbp]
+\centering
+\begin{tikzpicture}[
+    stage/.style={rectangle, draw, thick, rounded corners, minimum width=3.5cm, minimum height=1cm, align=center, font=\footnotesize},
+    arrow/.style={->, thick, line width=1.3pt}]
+    
+    % Six stages stacked vertically with descriptions inside
+    \node[stage, fill=gray!10] (s1) at (0, 7.5) {1. Design Protocol\\{\scriptsize Researcher creates workflow}};
+    \node[stage, fill=gray!15] (s2) at (0, 6) {2. Load \& Execute\\{\scriptsize System loads and runs trial}};
+    \node[stage, fill=gray!20] (s3) at (0, 4.5) {3. Log Events\\{\scriptsize Actions recorded with timestamps}};
+    \node[stage, fill=gray!25] (s4) at (0, 3) {4. Display Live State\\{\scriptsize Wizard sees real-time progress}};
+    \node[stage, fill=gray!30] (s5) at (0, 1.5) {5. Transfer Media\\{\scriptsize Video/audio saved to server}};
+    \node[stage, fill=gray!35] (s6) at (0, 0) {6. Analyze \& Playback\\{\scriptsize Review data with synchronized media}};
+    
+    % Downward arrows
+    \draw[arrow] (s1.south) -- (s2.north);
+    \draw[arrow] (s2.south) -- (s3.north);
+    \draw[arrow] (s3.south) -- (s4.north);
+    \draw[arrow] (s4.south) -- (s5.north);
+    \draw[arrow] (s5.south) -- (s6.north);
+    
+\end{tikzpicture}
+\caption{Trial data flow: from protocol design through execution and recording, to analysis and playback.}
+\label{fig:trial-dataflow}
+\end{figure}
+
+\section{Implementation Status}
+
+The core architectural components of HRIStudio have been implemented and validated. The framework successfully instantiates the design principles described earlier, demonstrating the feasibility of the approach and highlighting technical challenges to be addressed in future work.
+
+\begin{description}
+\item[User interfaces:] The Design, Execute, and Playback interfaces are operational. The visual design environment supports drag-and-drop construction of experiment workflows.
+\item[Server logic and data management:] The server manages experiment specifications, user authentication, trial session data, and comprehensive event logging.
+\item[Data model:] The hierarchical Study/Experiment/Trial data structures with full event logging infrastructure are implemented and operational.
+\item[Robot communication:] The system successfully communicates with robots through ROS, translating abstract protocol actions into robot-specific commands and receiving sensor data.
+\item[Plugin system:] The plugin architecture for supporting multiple robot platforms is in place, allowing researchers to define new robot capabilities without modifying core system code.
+\end{description}
+
+Components requiring continued development include robust real-time synchronization for complex multi-agent scenarios, comprehensive media playback with full temporal synchronization, and evaluation of the plugin system with diverse robot platforms.
+
+\section{Architectural Challenges and Solutions}
+
+\subsection{Real-Time Responsiveness During Trials}
+
+The Execute interface must maintain responsive communication between the wizard and the robot. Wireless networks and web-based systems can introduce delays that, if not carefully managed, degrade interaction quality or compromise safety. The implementation addresses this in three ways: maintaining persistent connections that avoid the overhead of repeatedly establishing communication; deploying the server on the same local network as the robot to minimize network delays; and anticipating likely next actions to prepare the robot in advance when possible.
+
+\subsection{Synchronizing Multiple Data Sources}
+
+During playback, researchers need to see video, hear audio, and review event logs in perfect synchronization. However, these data sources have different characteristics: video captures 30 frames per second, audio samples thousands of times per second, and event logs record discrete actions at irregular intervals. The implementation uses a common time reference and records precise timestamps for all data, allowing the playback system to align everything accurately regardless of differences in how the data was originally captured.
+
+\subsection{Extensibility Without Fragmentation}
+
+The plugin architecture allows researchers to add support for new robot platforms without modifying HRIStudio's core code. This design separates the evolution of the platform itself from the evolution of robot support: I can improve HRIStudio's core functionality without affecting plugins, and researchers can add new robots without waiting for core platform changes.
+
+However, this separation creates a design challenge: the plugin interface must be flexible enough to accommodate diverse robots, but not so flexible that every robot requires completely custom code. Finding this balance requires validating the plugin design with multiple real robots to ensure the abstraction is appropriate.
+
+\section{Mapping Architecture to Requirements}
+
+The implementation choices described in this chapter directly support the six requirements established earlier:
+
+\begin{description}
+\item[R1 (Integrated workflow):] The unified Design/Execute/Analysis pipeline with shared data models ensures coherent workflows without switching between separate tools.
+\item[R2 (Low technical barrier):] Web-based deployment and drag-and-drop interface design eliminate installation complexity and reduce the learning curve.
+\item[R3 (Real-time control):] Event-driven execution with persistent connections enables responsive, natural human-robot interaction.
+\item[R4 (Automated logging):] Comprehensive event logging captures the complete trial trace automatically, without requiring researchers to add logging code to their experiments.
+\item[R5 (Platform agnosticism):] The plugin architecture allows integration with diverse robot platforms without modifying core system code.
+\item[R6 (Collaborative support):] Multiple team members can simultaneously observe trial execution through shared, synchronized views.
+\end{description}
+
+\section{Chapter Summary}
+
+This chapter has described the key implementation decisions that realize HRIStudio's design principles. Building the system as a web application addresses accessibility by eliminating installation complexity and enabling natural collaboration. Using a consistent programming approach throughout the system reduces a common source of errors where different parts of an application become inconsistent.
+
+The separation between user interface, application logic, and data storage clarifies responsibilities and allows independent evolution of different system components. The plugin architecture directly addresses platform agnosticism (R5), enabling researchers to add robot support without modifying core code. Event-driven execution preserves natural interaction timing while comprehensive automatic logging satisfies requirement R4 and supports reproducibility. Local media recording ensures high-quality video and audio capture without interfering with live trials.
+
+While core architectural components are operational, continued work remains on optimizing real-time responsiveness for complex scenarios, refining multi-modal playback synchronization, and validating the plugin design with diverse robot platforms.

thesis/chapters/05_system_design.tex

@@ -1,23 +0,0 @@
-\chapter{System Design: HRIStudio Platform}
-\label{ch:design}
-
-\section{Design Goals}
-% TODO
-
-\section{High-Level Architecture}
-% TODO
-
-\section{Hierarchical Experimental Model}
-% TODO
-
-\section{Visual Experiment Designer}
-% TODO
-
-\section{Execution Interfaces}
-% TODO
-
-\section{Robot Integration and Plugins}
-% TODO
-
-\section{Data Management}
-% TODO

thesis/chapters/06_implementation.tex

@@ -1,11 +0,0 @@
-\chapter{Implementation Details}
-\label{ch:implementation}
-
-\section{Technology Stack}
-% TODO
-
-\section{Technical Challenges}
-% TODO
-
-\section{System Capabilities}
-% TODO

thesis/refs.bib

@@ -1,3 +1,11 @@
+@book{Baum1900,
+  title={{The Wonderful Wizard of Oz}},
+  author={Baum, L. Frank},
+  year={1900},
+  publisher={George M. Hill Company},
+  address={Chicago, IL}
+}
+
 @article{Lu2011,
   title={{Polonius: A Wizard of Oz Interface for HRI Experiments}},
   author={Lu, David V. and Smart, William D.},
@@ -34,6 +42,14 @@
   publisher={IEEE}
 }
 
+@inproceedings{Quigley2009,
+  title={{ROS: an open-source Robot Operating System}},
+  author={Quigley, Morgan and Conley, Ken and Gerkey, Brian and Faust, Josh and Foote, Tully and Leibs, Jeremy and Wheeler, Rob and Ng, Andrew Y},
+  booktitle={IEEE International Conference on Robotics and Automation},
+  year={2009},
+  url={https://api.semanticscholar.org/CorpusID:6324125}
+}
+
 @article{Riek2012,
 author = {Riek, Laurel D.},
 title = {{Wizard of Oz studies in HRI: a systematic review and new reporting guidelines}},
@@ -129,4 +145,81 @@ series = {OzCHI '15}
   keywords={Humanoid robots;Robot programming;Mobile robots;Human robot interaction;Programming environments;Prototypes;Microcomputers;Software tools;Software prototyping;Man machine systems},
   doi={10.1109/ROMAN.2009.5326209}}
 
+@book{Bartneck2024,
+  title={Human-Robot Interaction -- An Introduction},
+  author={Bartneck, Christoph and Belpaeme, Tony and Eyssel, Friederike and Kanda, Takayuki and Keijsers, Merel and Sabanovic, Selma},
+  year={2024},
+  edition={2nd},
+  publisher={Cambridge University Press},
+  address={Cambridge}
+}
+
+@inproceedings{Steinfeld2009,
+  author = {Steinfeld, Aaron and Jenkins, Odest Chadwicke and Scassellati, Brian},
+  title = {{The oz of wizard: simulating the human for interaction research}},
+  year = {2009},
+  isbn = {9781605582934},
+  publisher = {Association for Computing Machinery},
+  booktitle = {Proceedings of the 4th ACM/IEEE International Conference on Human Robot Interaction},
+  pages = {101--108},
+  doi = {10.1145/1514095.1514115}
+}
+
+@inproceedings{Gibert2013,
+  author = {Gibert, Guillaume and Petit, Morgan and Lance, Frederic and Pointeau, Gregoire and Dominey, Peter F.},
+  title = {{What makes human so different? Analysis of human-humanoid robot interaction with a super wizard of oz platform}},
+  year = {2013},
+  booktitle = {Proceedings of the 2013 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS)},
+  pages = {931--938},
+  doi = {10.1109/IROS.2013.6696465}
+}
+
+@article{Strazdas2020,
+  author = {Strazdas, Daniel and Hintz, Jonathan and Felßberg, Anna Maria and Al-Hamadi, Ayoub},
+  title = {{Robots and wizards: An investigation into natural human–robot interaction}},
+  journal = {IEEE Access},
+  volume = {8},
+  pages = {218808--218821},
+  year = {2020},
+  doi = {10.1109/ACCESS.2020.3042287}
+}
+
+@inproceedings{Helgert2024,
+  author = {Helgert, Anna and Straßmann, Christopher and Eimler, Sabine C.},
+  title = {{Unlocking potentials of virtual reality as a research tool in human-robot interaction: A wizard-of-oz approach}},
+  year = {2024},
+  booktitle = {Proceedings of the 2024 ACM/IEEE International Conference on Human-Robot Interaction},
+  pages = {123--132},
+  doi = {10.1145/3610978.3640741}
+}
+
+@misc{React2024,
+  title={{React: A JavaScript library for building user interfaces}},
+  author={Meta},
+  year={2024},
+  url={https://react.dev}
+}
+
+@misc{Nextjs2024,
+  title={{Next.js: The React Framework for the Web}},
+  author={Vercel},
+  year={2024},
+  url={https://nextjs.org}
+}
+
+@misc{TypeScript2024,
+  title={{TypeScript: Typed JavaScript at Any Scale}},
+  author={{Microsoft and the TypeScript Community}},
+  year={2024},
+  url={https://www.typescriptlang.org}
+}
+
+@misc{tRPC2024,
+  title={{tRPC: Move fast and break nothing. End-to-end typesafe APIs made easy}},
+  author={Alex Johansson and community contributors},
+  year={2024},
+  url={https://trpc.io}
+}
+
+
 

thesis/thesis.tex

@@ -4,6 +4,9 @@
 %\usepackage{graphics}            %Select graphics package
 \usepackage{graphicx}             %
 %\usepackage{amsthm}              %Add other packages as necessary
+\usepackage{tikz}                 %For programmatic diagrams
+\usetikzlibrary{shapes,arrows,positioning,fit,backgrounds}
+\usepackage[hidelinks]{hyperref}  %Enable hyperlinks and \autoref, hide colored boxes
 \begin{document}
 \butitle{A Web-Based Wizard-of-Oz Platform for Collaborative and Reproducible Human-Robot Interaction Research}
 \author{Sean O'Connor}
@@ -32,14 +35,13 @@
 
 \include{chapters/01_introduction}
 \include{chapters/02_background}
-\include{chapters/03_related_work}
-\include{chapters/04_reproducibility}
-\include{chapters/05_system_design}
-\include{chapters/06_implementation}
-\include{chapters/07_evaluation}
-\include{chapters/08_results}
-\include{chapters/09_discussion}
-\include{chapters/10_conclusion}
+\include{chapters/03_reproducibility}
+\include{chapters/04_system_design}
+\include{chapters/05_implementation}
+\include{chapters/06_evaluation}
+\include{chapters/07_results}
+\include{chapters/08_discussion}
+\include{chapters/09_conclusion}
 
 \backmatter
 %\bibliographystyle{thesis_num}   %This uses BU thesis file thesis_num.bst