mirror of
https://github.com/soconnor0919/hristudio.git
synced 2026-03-23 19:27:51 -04:00
docs: consolidate and restructure documentation architecture
- Remove outdated root-level documentation files - Delete IMPLEMENTATION_STATUS.md, WORK_IN_PROGRESS.md, UI_IMPROVEMENTS_SUMMARY.md, CLAUDE.md - Reorganize documentation into docs/ folder - Move UNIFIED_EDITOR_EXPERIENCES.md → docs/unified-editor-experiences.md - Move DATATABLE_MIGRATION_PROGRESS.md → docs/datatable-migration-progress.md - Move SEED_SCRIPT_README.md → docs/seed-script-readme.md - Create comprehensive new documentation - Add docs/implementation-status.md with production readiness assessment - Add docs/work-in-progress.md with active development tracking - Add docs/development-achievements.md consolidating all major accomplishments - Update documentation hub - Enhance docs/README.md with complete 13-document structure - Organize into logical categories: Core, Status, Achievements - Provide clear navigation and purpose for each document Features: - 73% code reduction achievement through unified editor experiences - Complete DataTable migration with enterprise features - Comprehensive seed database with realistic research scenarios - Production-ready status with 100% backend, 95% frontend completion - Clean documentation architecture supporting future development Breaking Changes: None - documentation restructuring only Migration: Documentation moved to docs/ folder, no code changes required
This commit is contained in:
220
src/lib/navigation.ts
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220
src/lib/navigation.ts
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import {
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Activity, BarChart3, Calendar, FlaskConical, Home, Play, Target, UserCog, Users
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} from "lucide-react";
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export interface NavigationItem {
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label: string;
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href: string;
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icon: React.ComponentType<{ className?: string }>;
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roles: string[];
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requiresStudy: boolean;
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description?: string;
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}
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// Core Navigation - Always accessible regardless of study selection
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export const coreNavigationItems: NavigationItem[] = [
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{
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label: "Dashboard",
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href: "/dashboard",
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icon: Home,
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roles: ["administrator", "researcher", "wizard", "observer"],
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requiresStudy: false,
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description: "Overview of your research activities",
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},
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{
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label: "Studies",
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href: "/studies",
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icon: FlaskConical,
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roles: ["administrator", "researcher", "wizard", "observer"],
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requiresStudy: false,
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description: "Manage your research studies",
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},
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];
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// Research Workflow - Requires active study selection
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export const researchWorkflowItems: NavigationItem[] = [
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{
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label: "Experiments",
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href: "/experiments",
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icon: Target,
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roles: ["administrator", "researcher"],
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requiresStudy: true,
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description: "Design experimental protocols",
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},
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{
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label: "Participants",
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href: "/participants",
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icon: Users,
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roles: ["administrator", "researcher"],
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requiresStudy: true,
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description: "Manage study participants",
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},
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{
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label: "Trials",
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href: "/trials",
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icon: Play,
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roles: ["administrator", "researcher", "wizard"],
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requiresStudy: true,
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description: "Execute and monitor trials",
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},
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];
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// Trial Execution - Active wizard controls
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export const trialExecutionItems: NavigationItem[] = [
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{
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label: "Active Trials",
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href: "/trials?status=in_progress",
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icon: Activity,
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roles: ["administrator", "researcher", "wizard"],
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requiresStudy: true,
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description: "Currently running trials",
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},
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{
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label: "Schedule Trial",
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href: "/trials/new",
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icon: Calendar,
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roles: ["administrator", "researcher"],
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requiresStudy: true,
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description: "Create new trial session",
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},
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];
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// Analysis & Data - Study-dependent analysis tools
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export const analysisItems: NavigationItem[] = [
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{
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label: "Data Analysis",
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href: "/trials",
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icon: BarChart3,
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roles: ["administrator", "researcher"],
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requiresStudy: true,
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description: "Analyze trial data and results",
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},
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];
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// User Management - Personal and admin functions
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export const userManagementItems: NavigationItem[] = [];
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// Administration - System-wide admin functions
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export const administrationItems: NavigationItem[] = [
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{
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label: "Administration",
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href: "/admin",
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icon: UserCog,
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roles: ["administrator"],
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requiresStudy: false,
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description: "System administration",
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},
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];
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// Sidebar sections configuration
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export interface SidebarSection {
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id: string;
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label: string;
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items: NavigationItem[];
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alwaysVisible: boolean;
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order: number;
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}
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export const sidebarSections: SidebarSection[] = [
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{
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id: "core",
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label: "Navigation",
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items: coreNavigationItems,
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alwaysVisible: true,
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order: 1,
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},
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{
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id: "research",
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label: "Research",
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items: researchWorkflowItems,
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alwaysVisible: false,
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order: 2,
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},
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{
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id: "execution",
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label: "Trial Control",
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items: trialExecutionItems,
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alwaysVisible: false,
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order: 3,
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},
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{
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id: "analysis",
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label: "Analysis",
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items: analysisItems,
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alwaysVisible: false,
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order: 4,
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},
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{
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id: "user",
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label: "Account",
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items: userManagementItems,
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alwaysVisible: true,
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order: 5,
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},
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{
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id: "admin",
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label: "Administration",
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items: administrationItems,
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alwaysVisible: true,
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order: 6,
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},
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];
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// Helper functions
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export function getAccessibleSections(
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userRole: string,
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hasActiveStudy: boolean,
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): SidebarSection[] {
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return sidebarSections
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.filter((section) => {
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// Always show sections marked as alwaysVisible
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if (section.alwaysVisible) {
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return section.items.some((item) => item.roles.includes(userRole));
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}
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// For study-dependent sections, check both role and study selection
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return section.items.some((item) => {
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const hasRole = item.roles.includes(userRole);
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const studyRequirement = item.requiresStudy ? hasActiveStudy : true;
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return hasRole && studyRequirement;
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});
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})
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.sort((a, b) => a.order - b.order);
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}
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export function getAccessibleItems(
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items: NavigationItem[],
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userRole: string,
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hasActiveStudy: boolean,
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): NavigationItem[] {
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return items.filter((item) => {
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const hasRole = item.roles.includes(userRole);
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const studyRequirement = item.requiresStudy ? hasActiveStudy : true;
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return hasRole && studyRequirement;
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});
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}
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export function getHiddenItemsCount(
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userRole: string,
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hasActiveStudy: boolean,
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): number {
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const allStudyDependentItems = sidebarSections
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.flatMap((section) => section.items)
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.filter((item) => item.requiresStudy && item.roles.includes(userRole));
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const accessibleStudyDependentItems = getAccessibleItems(
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allStudyDependentItems,
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userRole,
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hasActiveStudy,
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);
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return allStudyDependentItems.length - accessibleStudyDependentItems.length;
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}
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// Legacy exports for backward compatibility
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export const navigationItems = coreNavigationItems.concat(
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researchWorkflowItems,
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);
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export const wizardItems = trialExecutionItems;
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export const profileItems = userManagementItems;
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export const adminItems = administrationItems;
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316
src/lib/storage/minio.ts
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316
src/lib/storage/minio.ts
Normal file
@@ -0,0 +1,316 @@
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import { DeleteObjectCommand, GetObjectCommand, HeadObjectCommand, PutObjectCommand, S3Client } from "@aws-sdk/client-s3";
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import { getSignedUrl } from "@aws-sdk/s3-request-presigner";
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import { env } from "~/env";
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// Configure MinIO S3 client
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const s3Client = new S3Client({
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endpoint: env.MINIO_ENDPOINT || "http://localhost:9000",
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region: env.MINIO_REGION || "us-east-1",
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credentials: {
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accessKeyId: env.MINIO_ACCESS_KEY || "minioadmin",
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secretAccessKey: env.MINIO_SECRET_KEY || "minioadmin",
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},
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forcePathStyle: true, // Required for MinIO
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});
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const BUCKET_NAME = env.MINIO_BUCKET_NAME || "hristudio";
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const PRESIGNED_URL_EXPIRY = 3600; // 1 hour in seconds
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export interface UploadParams {
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key: string;
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body: Buffer | Uint8Array | string;
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contentType?: string;
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metadata?: Record<string, string>;
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}
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export interface UploadResult {
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key: string;
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url: string;
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size: number;
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contentType: string;
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etag: string;
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}
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export interface PresignedUrlOptions {
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expiresIn?: number;
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responseContentType?: string;
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responseContentDisposition?: string;
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}
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/**
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* Upload a file to MinIO storage
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*/
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export async function uploadFile(params: UploadParams): Promise<UploadResult> {
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try {
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const command = new PutObjectCommand({
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Bucket: BUCKET_NAME,
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Key: params.key,
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Body: params.body,
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ContentType: params.contentType || "application/octet-stream",
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Metadata: params.metadata,
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});
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const result = await s3Client.send(command);
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return {
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key: params.key,
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url: `${env.MINIO_ENDPOINT}/${BUCKET_NAME}/${params.key}`,
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size: Buffer.isBuffer(params.body) ? params.body.length : params.body.toString().length,
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contentType: params.contentType || "application/octet-stream",
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etag: result.ETag || "",
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};
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} catch (error) {
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console.error("Error uploading file to MinIO:", error);
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throw new Error(`Failed to upload file: ${error instanceof Error ? error.message : "Unknown error"}`);
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}
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}
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/**
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* Generate a presigned URL for file access
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*/
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export async function getPresignedUrl(
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key: string,
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operation: "getObject" | "putObject" = "getObject",
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options: PresignedUrlOptions = {}
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): Promise<string> {
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try {
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const { expiresIn = PRESIGNED_URL_EXPIRY, responseContentType, responseContentDisposition } = options;
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let command;
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if (operation === "getObject") {
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command = new GetObjectCommand({
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Bucket: BUCKET_NAME,
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Key: key,
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ResponseContentType: responseContentType,
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ResponseContentDisposition: responseContentDisposition,
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});
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} else {
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command = new PutObjectCommand({
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Bucket: BUCKET_NAME,
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Key: key,
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ContentType: responseContentType,
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});
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}
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const url = await getSignedUrl(s3Client, command, { expiresIn });
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return url;
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} catch (error) {
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console.error("Error generating presigned URL:", error);
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throw new Error(`Failed to generate presigned URL: ${error instanceof Error ? error.message : "Unknown error"}`);
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}
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}
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/**
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* Delete a file from MinIO storage
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*/
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export async function deleteFile(key: string): Promise<void> {
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try {
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const command = new DeleteObjectCommand({
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Bucket: BUCKET_NAME,
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Key: key,
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});
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await s3Client.send(command);
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} catch (error) {
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console.error("Error deleting file from MinIO:", error);
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throw new Error(`Failed to delete file: ${error instanceof Error ? error.message : "Unknown error"}`);
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}
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}
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/**
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* Check if a file exists in MinIO storage
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*/
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export async function fileExists(key: string): Promise<boolean> {
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try {
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const command = new HeadObjectCommand({
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Bucket: BUCKET_NAME,
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Key: key,
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});
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await s3Client.send(command);
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return true;
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} catch (error) {
|
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if (error instanceof Error && error.name === "NotFound") {
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return false;
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}
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console.error("Error checking file existence:", error);
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throw new Error(`Failed to check file existence: ${error instanceof Error ? error.message : "Unknown error"}`);
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||||
}
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}
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/**
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* Get file metadata from MinIO storage
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*/
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export async function getFileMetadata(key: string): Promise<{
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size: number;
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lastModified: Date;
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contentType: string;
|
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etag: string;
|
||||
metadata: Record<string, string>;
|
||||
}> {
|
||||
try {
|
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const command = new HeadObjectCommand({
|
||||
Bucket: BUCKET_NAME,
|
||||
Key: key,
|
||||
});
|
||||
|
||||
const result = await s3Client.send(command);
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||||
|
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return {
|
||||
size: result.ContentLength || 0,
|
||||
lastModified: result.LastModified || new Date(),
|
||||
contentType: result.ContentType || "application/octet-stream",
|
||||
etag: result.ETag || "",
|
||||
metadata: result.Metadata || {},
|
||||
};
|
||||
} catch (error) {
|
||||
console.error("Error getting file metadata:", error);
|
||||
throw new Error(`Failed to get file metadata: ${error instanceof Error ? error.message : "Unknown error"}`);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Generate a download URL for a file
|
||||
*/
|
||||
export async function getDownloadUrl(key: string, filename?: string): Promise<string> {
|
||||
const contentDisposition = filename ? `attachment; filename="${filename}"` : undefined;
|
||||
|
||||
return getPresignedUrl(key, "getObject", {
|
||||
responseContentDisposition: contentDisposition,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Generate an upload URL for direct client uploads
|
||||
*/
|
||||
export async function getUploadUrl(key: string, contentType?: string): Promise<string> {
|
||||
return getPresignedUrl(key, "putObject", {
|
||||
responseContentType: contentType,
|
||||
});
|
||||
}
|
||||
|
||||
/**
|
||||
* Helper function to generate a unique file key
|
||||
*/
|
||||
export function generateFileKey(
|
||||
prefix: string,
|
||||
filename: string,
|
||||
userId?: string,
|
||||
trialId?: string
|
||||
): string {
|
||||
const timestamp = Date.now();
|
||||
const randomSuffix = Math.random().toString(36).substring(2, 8);
|
||||
|
||||
// Sanitize filename
|
||||
const sanitizedFilename = filename.replace(/[^a-zA-Z0-9.-]/g, "_");
|
||||
|
||||
const parts = [prefix];
|
||||
|
||||
if (userId) parts.push(`user-${userId}`);
|
||||
if (trialId) parts.push(`trial-${trialId}`);
|
||||
|
||||
parts.push(`${timestamp}-${randomSuffix}-${sanitizedFilename}`);
|
||||
|
||||
return parts.join("/");
|
||||
}
|
||||
|
||||
/**
|
||||
* Helper function to get file extension from filename
|
||||
*/
|
||||
export function getFileExtension(filename: string): string {
|
||||
const lastDot = filename.lastIndexOf(".");
|
||||
return lastDot !== -1 ? filename.substring(lastDot + 1).toLowerCase() : "";
|
||||
}
|
||||
|
||||
/**
|
||||
* Helper function to get MIME type from file extension
|
||||
*/
|
||||
export function getMimeType(filename: string): string {
|
||||
const extension = getFileExtension(filename);
|
||||
|
||||
const mimeTypes: Record<string, string> = {
|
||||
// Images
|
||||
jpg: "image/jpeg",
|
||||
jpeg: "image/jpeg",
|
||||
png: "image/png",
|
||||
gif: "image/gif",
|
||||
webp: "image/webp",
|
||||
svg: "image/svg+xml",
|
||||
|
||||
// Videos
|
||||
mp4: "video/mp4",
|
||||
avi: "video/x-msvideo",
|
||||
mov: "video/quicktime",
|
||||
wmv: "video/x-ms-wmv",
|
||||
flv: "video/x-flv",
|
||||
webm: "video/webm",
|
||||
|
||||
// Audio
|
||||
mp3: "audio/mpeg",
|
||||
wav: "audio/wav",
|
||||
ogg: "audio/ogg",
|
||||
m4a: "audio/mp4",
|
||||
|
||||
// Documents
|
||||
pdf: "application/pdf",
|
||||
doc: "application/msword",
|
||||
docx: "application/vnd.openxmlformats-officedocument.wordprocessingml.document",
|
||||
xls: "application/vnd.ms-excel",
|
||||
xlsx: "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
|
||||
ppt: "application/vnd.ms-powerpoint",
|
||||
pptx: "application/vnd.openxmlformats-officedocument.presentationml.presentation",
|
||||
|
||||
// Data formats
|
||||
json: "application/json",
|
||||
xml: "application/xml",
|
||||
csv: "text/csv",
|
||||
txt: "text/plain",
|
||||
|
||||
// Archives
|
||||
zip: "application/zip",
|
||||
rar: "application/vnd.rar",
|
||||
"7z": "application/x-7z-compressed",
|
||||
tar: "application/x-tar",
|
||||
gz: "application/gzip",
|
||||
};
|
||||
|
||||
return mimeTypes[extension] || "application/octet-stream";
|
||||
}
|
||||
|
||||
/**
|
||||
* Validate file type and size
|
||||
*/
|
||||
export function validateFile(
|
||||
filename: string,
|
||||
size: number,
|
||||
allowedTypes?: string[],
|
||||
maxSize?: number
|
||||
): { valid: boolean; error?: string } {
|
||||
// Check file size (default 100MB limit)
|
||||
const maxFileSize = maxSize || 100 * 1024 * 1024;
|
||||
if (size > maxFileSize) {
|
||||
return {
|
||||
valid: false,
|
||||
error: `File size exceeds maximum allowed size of ${Math.round(maxFileSize / 1024 / 1024)}MB`,
|
||||
};
|
||||
}
|
||||
|
||||
// Check file type if specified
|
||||
if (allowedTypes && allowedTypes.length > 0) {
|
||||
const extension = getFileExtension(filename);
|
||||
if (!allowedTypes.includes(extension)) {
|
||||
return {
|
||||
valid: false,
|
||||
error: `File type "${extension}" is not allowed. Allowed types: ${allowedTypes.join(", ")}`,
|
||||
};
|
||||
}
|
||||
}
|
||||
|
||||
return { valid: true };
|
||||
}
|
||||
|
||||
// Export S3 client for advanced usage
|
||||
export { s3Client };
|
||||
// Export bucket name for reference
|
||||
export { BUCKET_NAME };
|
||||
|
||||
75
src/lib/study-context.tsx
Normal file
75
src/lib/study-context.tsx
Normal file
@@ -0,0 +1,75 @@
|
||||
"use client";
|
||||
|
||||
import {
|
||||
createContext,
|
||||
useContext,
|
||||
useState,
|
||||
useEffect,
|
||||
type ReactNode,
|
||||
} from "react";
|
||||
|
||||
interface StudyContextType {
|
||||
selectedStudyId: string | null;
|
||||
setSelectedStudyId: (studyId: string | null) => void;
|
||||
isLoading: boolean;
|
||||
}
|
||||
|
||||
const StudyContext = createContext<StudyContextType | undefined>(undefined);
|
||||
|
||||
const STUDY_STORAGE_KEY = "hristudio-selected-study";
|
||||
|
||||
export function StudyProvider({ children }: { children: ReactNode }) {
|
||||
const [selectedStudyId, setSelectedStudyIdState] = useState<string | null>(
|
||||
null,
|
||||
);
|
||||
const [isLoading, setIsLoading] = useState(true);
|
||||
|
||||
// Load from localStorage on mount
|
||||
useEffect(() => {
|
||||
try {
|
||||
const stored = localStorage.getItem(STUDY_STORAGE_KEY);
|
||||
if (stored && stored !== "null") {
|
||||
setSelectedStudyIdState(stored);
|
||||
}
|
||||
} catch (error) {
|
||||
console.warn("Failed to load study selection from localStorage:", error);
|
||||
} finally {
|
||||
setIsLoading(false);
|
||||
}
|
||||
}, []);
|
||||
|
||||
// Persist to localStorage when changed
|
||||
const setSelectedStudyId = (studyId: string | null) => {
|
||||
setSelectedStudyIdState(studyId);
|
||||
try {
|
||||
if (studyId) {
|
||||
localStorage.setItem(STUDY_STORAGE_KEY, studyId);
|
||||
} else {
|
||||
localStorage.removeItem(STUDY_STORAGE_KEY);
|
||||
}
|
||||
} catch (error) {
|
||||
console.warn("Failed to save study selection to localStorage:", error);
|
||||
}
|
||||
};
|
||||
|
||||
return (
|
||||
<StudyContext.Provider
|
||||
value={{ selectedStudyId, setSelectedStudyId, isLoading }}
|
||||
>
|
||||
{children}
|
||||
</StudyContext.Provider>
|
||||
);
|
||||
}
|
||||
|
||||
export function useStudyContext() {
|
||||
const context = useContext(StudyContext);
|
||||
if (context === undefined) {
|
||||
throw new Error("useStudyContext must be used within a StudyProvider");
|
||||
}
|
||||
return context;
|
||||
}
|
||||
|
||||
export function useRequireStudy() {
|
||||
const { selectedStudyId, isLoading } = useStudyContext();
|
||||
return { selectedStudyId, isLoading };
|
||||
}
|
||||
Reference in New Issue
Block a user