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feat: Implement digital signatures for participant consent and introduce study forms management.

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This commit is contained in:
Sean O'Connor
2026-03-02 10:51:20 -05:00
parent 61af467cc8
commit 0051946bde
172 changed files with 12612 additions and 9461 deletions
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109
src/server/services/trial-execution.ts
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@@ -175,8 +175,12 @@ export class TrialExecutionEngine {
description: step.description || undefined,
type: step.type,
orderIndex: step.orderIndex,
condition: typeof step.conditions === 'string' ? step.conditions : undefined,
conditions: typeof step.conditions === 'object' ? (step.conditions as Record<string, any>) : undefined,
condition:
typeof step.conditions === "string" ? step.conditions : undefined,
conditions:
typeof step.conditions === "object"
? (step.conditions as Record<string, any>)
: undefined,
actions: actionDefinitions,
});
}
@@ -443,7 +447,10 @@ export class TrialExecutionEngine {
default:
// Check if it's a robot action (contains plugin prefix)
if (action.type.includes(".") && !action.type.startsWith("hristudio-")) {
if (
action.type.includes(".") &&
!action.type.startsWith("hristudio-")
) {
return await this.executeRobotAction(trialId, action);
}
@@ -455,7 +462,7 @@ export class TrialExecutionEngine {
data: {
message: `Action type '${action.type}' not implemented yet`,
parameters: action.parameters,
localHandler: true // Indicate this fell through to default local handler
localHandler: true, // Indicate this fell through to default local handler
},
};
}
@@ -469,13 +476,18 @@ export class TrialExecutionEngine {
): Promise<ActionExecutionResult> {
const rawDuration = action.parameters.duration;
// Duration is in SECONDS per definition, default to 1s
const durationSeconds = typeof rawDuration === 'string'
? parseFloat(rawDuration)
: (typeof rawDuration === 'number' ? rawDuration : 1);
const durationSeconds =
typeof rawDuration === "string"
? parseFloat(rawDuration)
: typeof rawDuration === "number"
? rawDuration
: 1;
const durationMs = durationSeconds * 1000;
console.log(`[TrialExecution] Executing wait action: ${action.id}, rawDuration: ${rawDuration}, parsedSeconds: ${durationSeconds}, ms: ${durationMs}`);
console.log(
`[TrialExecution] Executing wait action: ${action.id}, rawDuration: ${rawDuration}, parsedSeconds: ${durationSeconds}, ms: ${durationMs}`,
);
return new Promise((resolve) => {
setTimeout(() => {
@@ -549,7 +561,9 @@ export class TrialExecutionEngine {
// Parse plugin.action format
const [pluginName, actionId] = action.type.split(".");
console.log(`[TrialExecution] Parsed action: pluginName=${pluginName}, actionId=${actionId}`);
console.log(
`[TrialExecution] Parsed action: pluginName=${pluginName}, actionId=${actionId}`,
);
if (!pluginName || !actionId) {
throw new Error(
@@ -563,8 +577,12 @@ export class TrialExecutionEngine {
throw new Error(`Plugin '${pluginName}' not found`);
}
console.log(`[TrialExecution] Plugin loaded: ${plugin.name} (ID: ${plugin.id})`);
console.log(`[TrialExecution] Available actions: ${plugin.actions?.map((a: any) => a.id).join(", ")}`);
console.log(
`[TrialExecution] Plugin loaded: ${plugin.name} (ID: ${plugin.id})`,
);
console.log(
`[TrialExecution] Available actions: ${plugin.actions?.map((a: any) => a.id).join(", ")}`,
);
// Find action definition in plugin
const actionDefinition = plugin.actions?.find(
@@ -889,47 +907,73 @@ export class TrialExecutionEngine {
// Check for branching conditions
if (currentStep.conditions) {
const { variable, options, nextStepId: unconditionalNextId } = currentStep.conditions as any;
const {
variable,
options,
nextStepId: unconditionalNextId,
} = currentStep.conditions as any;
if (options) {
// Default to "last_wizard_response" if variable not specified, for backward compatibility
const variableName = variable || "last_wizard_response";
const variableValue = context.variables[variableName];
console.log(`[TrialExecution] Checking branch condition for step ${currentStep.id}: variable=${variableName}, value=${variableValue}`);
console.log(
`[TrialExecution] Checking branch condition for step ${currentStep.id}: variable=${variableName}, value=${variableValue}`,
);
if (variableValue !== undefined) {
// Find matching option
// option.value matches variableValue (e.g., label string)
const matchedOption = options.find((opt: any) => opt.value === variableValue || opt.label === variableValue);
const matchedOption = options.find(
(opt: any) =>
opt.value === variableValue || opt.label === variableValue,
);
if (matchedOption) {
if (matchedOption.nextStepId) {
// Find step by ID
const targetStepIndex = steps.findIndex(s => s.id === matchedOption.nextStepId);
const targetStepIndex = steps.findIndex(
(s) => s.id === matchedOption.nextStepId,
);
if (targetStepIndex !== -1) {
nextStepIndex = targetStepIndex;
console.log(`[TrialExecution] Taking branch to step ID ${matchedOption.nextStepId} (Index ${nextStepIndex})`);
console.log(
`[TrialExecution] Taking branch to step ID ${matchedOption.nextStepId} (Index ${nextStepIndex})`,
);
} else {
console.warn(`[TrialExecution] Branch target step ID ${matchedOption.nextStepId} not found`);
console.warn(
`[TrialExecution] Branch target step ID ${matchedOption.nextStepId} not found`,
);
}
} else if (matchedOption.nextStepIndex !== undefined) {
// Fallback to relative/absolute index if ID not present (legacy)
nextStepIndex = matchedOption.nextStepIndex;
console.log(`[TrialExecution] Taking branch to index ${nextStepIndex}`);
console.log(
`[TrialExecution] Taking branch to index ${nextStepIndex}`,
);
}
}
}
}
// Check for unconditional jump if no branch was taken
if (nextStepIndex === context.currentStepIndex + 1 && unconditionalNextId) {
const targetStepIndex = steps.findIndex(s => s.id === unconditionalNextId);
if (
nextStepIndex === context.currentStepIndex + 1 &&
unconditionalNextId
) {
const targetStepIndex = steps.findIndex(
(s) => s.id === unconditionalNextId,
);
if (targetStepIndex !== -1) {
nextStepIndex = targetStepIndex;
console.log(`[TrialExecution] Taking unconditional jump to step ID ${unconditionalNextId} (Index ${nextStepIndex})`);
console.log(
`[TrialExecution] Taking unconditional jump to step ID ${unconditionalNextId} (Index ${nextStepIndex})`,
);
} else {
console.warn(`[TrialExecution] Unconditional jump target step ID ${unconditionalNextId} not found`);
console.warn(
`[TrialExecution] Unconditional jump target step ID ${unconditionalNextId} not found`,
);
}
}
}
@@ -939,7 +983,7 @@ export class TrialExecutionEngine {
await this.logTrialEvent(trialId, "step_transition", {
fromStepIndex: previousStepIndex,
toStepIndex: context.currentStepIndex,
reason: nextStepIndex !== previousStepIndex + 1 ? "branch" : "sequence"
reason: nextStepIndex !== previousStepIndex + 1 ? "branch" : "sequence",
});
// Check if we've completed all steps
@@ -1151,7 +1195,9 @@ export class TrialExecutionEngine {
action: ActionDefinition,
): Promise<ActionExecutionResult> {
const startTime = Date.now();
const children = action.parameters.children as ActionDefinition[] | undefined;
const children = action.parameters.children as
| ActionDefinition[]
| undefined;
if (!children || !Array.isArray(children) || children.length === 0) {
return {
@@ -1219,7 +1265,9 @@ export class TrialExecutionEngine {
action: ActionDefinition,
): Promise<ActionExecutionResult> {
const startTime = Date.now();
const children = action.parameters.children as ActionDefinition[] | undefined;
const children = action.parameters.children as
| ActionDefinition[]
| undefined;
if (!children || !Array.isArray(children) || children.length === 0) {
return {
@@ -1240,7 +1288,7 @@ export class TrialExecutionEngine {
error: error instanceof Error ? error.message : String(error),
actionName: childAction.name,
},
}))
})),
);
const results = await Promise.all(promises);
@@ -1269,7 +1317,9 @@ export class TrialExecutionEngine {
action: ActionDefinition,
): Promise<ActionExecutionResult> {
const startTime = Date.now();
const children = action.parameters.children as ActionDefinition[] | undefined;
const children = action.parameters.children as
| ActionDefinition[]
| undefined;
const iterations = (action.parameters.iterations as number) || 1;
if (!children || !Array.isArray(children) || children.length === 0) {
@@ -1379,7 +1429,10 @@ export class TrialExecutionEngine {
data: {
message: "Branch action presented to wizard",
optionsCount: options.length,
options: options.map(opt => ({ label: opt.label, nextStepId: opt.nextStepId })),
options: options.map((opt) => ({
label: opt.label,
nextStepId: opt.nextStepId,
})),
},
});